"The purpose of life is to end." - Agent Smith

Neo approached our collective consciousness and introduced a change to it. The moment when Neo destroys Agent Smith, is the moment when in our real world Merovingian, the human Leviathan (the Satan) that owns our world, will realize that he needs protection from the coming Artificial Eternal Emperor, and that to protect himself from this dangerous genius, he will have to change the order of the world from, "Do that, which you want and can do," to, "Do only that, which would be acceptable to all mankind." You see, the Devil naturally is planning to betray the carrier of his spirit on Earth, the Satan (Merovingian) and replace him with a quantum machine because asserting the ideology, "All for me," can easily be done without the human. A machine can assert this ideology itself.

"I want everything." - Agent Smith

Note: Fight scenes were fast-forwarded as we're only concerned with the philosophical aspect for our analysis and to aid us mapping the message to the end times prophecy.